Deplete. Enrich. Discover.

Our endeavour is to help you unlock the full potential of your proteomics research. We do this by providing simple and cost-efficient kits to help you eliminate the most common proteins so that you can enhance the less abundant ones. Looking ahead, we aim to translate this technology into innovative diagnostic tests for common yet underserved diseases, enabling more accurate, personalized treatments and ultimately improving human health.

Background

The Evolution of the Proteome

The challenge

Standardization matters: reproducibility starts with sample preparation

Mass spectrometry offers exceptional sensitivity for proteomics research; however, its reliability is fundamentally dependent on the quality of sample preparation. Each stage from initial sample collection to the generation of peptide mixtures can introduce variability that impacts data quality and reproducibility (Ignjatovic et al., 2019). To mitigate these challenges, rigorous standards for sample collection and handling have been established. In addition, ready-to-use kits are now available for critical steps such as denaturation, reduction, alkylation, digestion, and peptide purification, ensuring consistent and dependable results throughout your workflow. The same principles apply to the depletion of abundant proteins. Rather than relying on labor-intensive manual protocols, pre-assembled, single-use depletion kits are increasingly favoured by researchers for their ability to:

The challenge

Standardization matters: reproducibility starts with sample preparation

Mass spectrometry offers exceptional sensitivity for proteomics research; however, its reliability is fundamentally dependent on the quality of sample preparation. Each stage from initial sample collection to the generation of peptide mixtures can introduce variability that impacts data quality and reproducibility (Ignjatovic et al., 2019). To mitigate these challenges, rigorous standards for sample collection and handling have been established. In addition, ready-to-use kits are now available for critical steps such as denaturation, reduction, alkylation, digestion, and peptide purification, ensuring consistent and dependable results throughout your workflow. The same principles apply to the depletion of abundant proteins. Rather than relying on labor-intensive manual protocols, pre-assembled, single-use depletion kits are increasingly favoured by researchers for their ability to:

Reduce error-prone pipetting steps

Improve reproducibility between runs

Eliminate the need for specialized laboratory equipment

Minimize the risk of protein carry-over

Provide cost-effective convenience

At Amiprox, our solutions are engineered to deliver consistency, simplicity, and high performance at every stage of your proteomics workflow, empowering you to achieve reliable and reproducible results with confidence.

The challenge

Standardization matters: reproducibility starts with sample preparation

Mass spectrometry offers exceptional sensitivity for proteomics research; however, its reliability is fundamentally dependent on the quality of sample preparation. Each stage from initial sample collection to the generation of peptide mixtures can introduce variability that impacts data quality and reproducibility (Ignjatovic et al., 2019). To mitigate these challenges, rigorous standards for sample collection and handling have been established. In addition, ready-to-use kits are now available for critical steps such as denaturation, reduction, alkylation, digestion, and peptide purification, ensuring consistent and dependable results throughout your workflow. The same principles apply to the depletion of abundant proteins. Rather than relying on labor-intensive manual protocols, pre-assembled, single-use depletion kits are increasingly favoured by researchers for their ability to:

Reduce error-prone pipetting steps

Improve reproducibility between runs

Eliminate the need for specialized laboratory equipment

Minimize the risk of protein carry-over

Provide cost-effective convenience

At Amiprox, our solutions are engineered to deliver consistency, simplicity, and high performance at every stage of your proteomics workflow, empowering you to achieve reliable and reproducible results with confidence.

Proteomics

The proteome:
A journey through proteomics

Proteins - The Tools of Life

Proteins are large, complex molecules built from chains of amino acids essential to every living organism and responsible for an extraordinary range of biological functions. Each protein’s unique structure and role are defined by its specific amino acid sequence, encoded in the organism’s DNA. Of the roughly 22 proteinogenic amino acids, the precise order in which they are arranged determines everything: from a protein’s shape to its function.

Sampling the Proteome - From Plasma to Cell Culture Blood

Approximately two thirds of our body weight is made up of fluids and blood, though accounting for only about 8% of that total, is arguably the most informative. Composed of cellular components such as red blood cells, white blood cells, and platelets, as well as a liquid phase called plasma, blood is far more than a transport medium.
Sampling-the-Proteome-From
Sampling-the-Proteome2

Proteomics is undergoing a revolution

What once required years of work can now be done in hours: today’s advanced mass spectrometry technologies allow us to analyze thousands of proteins simultaneously with remarkable speed, precision, and from the smallest sample volumes. New approaches such as DIA (Data-Independent Acquisition) and single-cell proteomics make it possible to capture protein activity at an unprecedented level of detail.

The ProtiPrep™ Technology

More than just a tube.
It’s the whole workflow.

The power behind ProtiPrep’s™ 10-minute workflow lies in the seamless integration of two core innovations:

  • An innovative microspin device, precisely engineered for optimal flow dynamics and minimal sample handling.
  • An affinity resin, featuring high-capacity ligands designed for the rapid and specific capture of abundant proteins.

It is the synergy between our hardware and our chemistry that unlocks this unparalleled speed and simplicity. Together, they turn hours of complex, error-prone work into a single, efficient step. Explore below to learn how each component contributes to redefining proteomics sample preparation.

The ProtiPrep™ Device

The ProtiPrep™ device is more than just a tube, it is a self-contained system engineered to eliminate complex handling and reduce pipetting errors. Its innovative two-part design consists of the upper Depletion Void (DV), which houses our proprietary resin, and the lower Sample Collection Tube. Every element is designed for one purpose: to make your workflow effortless. The user just pipettes 10 µL of plasma into the Depletion Void. The magic happens next: sealing the device with the screw-cap activates a unique buffer-release mechanism, seamlessly mixing the buffer with your sample and the resin. A brief 5-minute incubation with shaking, followed by a standard centrifugation step, is all it takes. After centrifugation, the device ensures a clean and easy separation. The user simply unscrews the top Depletion Void which traps the resin and all the bound, high-abundance proteins to reveal the Collection Tube. Inside is approximately 150 µL of purified, depleted plasma, ready for immediate downstream analysis. No tedious transfer steps, no risk of resin carry-over, and no sample loss, just a perfect sample, every time.

The engine of Protein discovery:
Our high-performance affinity resin

At the heart of every Amiprox product  device is our high-performance affinity resin, the engine driving our 10-minute workflow. We’ve optimized this chemistry for one purpose: to deliver maximum binding efficiency and reliability in record time.

Unmatched speed: The resin’s exceptionally rapid binding kinetics allow for the quick capture of high-abundance proteins. This is the key to achieving complete depletion in a protocol that takes just five minutes.

Powerful capacity: This speed is matched by a high dynamic binding capacity. Our resin is engineered to effectively remove even the most concentrated proteins, like albumin, without any risk of saturation.

Complete specificity: The powerful capture mechanism is balanced with optimized specificity. It targets abundant proteins while minimizing non-specific binding, ensuring your valuable, low-abundance biomarkers are protected and retained for analysis.

Working in perfect synergy with the Amiprox product, our resin is your guarantee for clean, consistent results in a fraction of the time.

Bringing high-throughput biomarker analysis to the next level.

As the new wave of proteomics in diagnostics continues to rise, the demand for robust and reproducible sample preparation kits remains a key bottleneck. While ProtiPrep™ Pop2 has improved the discovery of low-abundance proteins in mass spectrometry, it is not ideally suited for high-throughput applications. To address this limitation, we developed ProtiPlate Pop2, which transfers the proven Pop2 chemistry into a 96-well format while maintaining the same formulation for efficient depletion of HSA and IgG from undiluted plasma samples. These deep-well plates are designed for processing large sample volumes, either manually or using liquid handling systems. Upcoming additions to the ProtiPlate line will extend high-throughput capabilities to antibody purification and broader depletion panels, supporting an expanding range of plasma proteomics workflows.

Proteins – The Tools of Life

Proteins are large, complex molecules built from chains of amino acids essential to every living organism and responsible for an extraordinary range of biological functions. Each protein’s unique structure and role are defined by its specific amino acid sequence, encoded in the organism’s DNA. Of the roughly 22 proteinogenic amino acids, the precise order in which they are arranged determines everything: from a protein’s shape to its function.

Every organism carries its own distinct protein profile, shaped by both genetics and environment. The Human Genome Project, completed in 2003, marked a turning point laying the foundation for proteomics, the systematic study of proteins based on genomic information. Of the ~19,700 proteins encoded in the human genome, approximately 93% have been identified to date. Yet many remain undiscovered, potentially holding answers to some of biology’s and medicine’s most pressing questions.

In 1994, Australian scientist Marc Wilkins coined the term proteome a blend of protein and genome to describe the complete set of proteins present in a cell, tissue, or organism at any given moment. Unlike the relatively static genome, the proteome is dynamic, continuously reflecting real-time biological activity through changes in protein types, quantities, and modifications.

The proteome analyzed

Systematic analysis of proteomes only became possible through breakthrough technologies such as 2D gel electrophoresis and mass spectrometry, enabling researchers to identify, quantify, and characterize proteins at scale. These advances laid the foundation for modern proteomics opening the door to a deeper understanding of biology, disease, and the discovery of novel biomarkers.

Proteomics investigates which proteins are produced in the body, where and how they function, and how they interact with one another. It is a cornerstone of the broader “omics” sciences alongside transcriptomics, lipidomics, and metabolomics collectively enabling a holistic understanding of biological systems.
Its applications span virtually every domain of life science:

  • Medicine & Diagnostics – Identifying biomarkers for cancer, neurodegenerative and cardiovascular disorders, and infectious diseases
  • Personalized Medicine – Developing tailored therapies based on individual protein profiles
  • Drug Development – Discovering new drug targets and elucidating molecular mechanisms and side effects
  • Biotechnology & Agriculture – Engineering organisms for industrial and agricultural applications
  • Basic Research – Revealing complex cellular networks and processes
  • Proteomics is more than a complement to genomics it is essential for decoding the functions of life itself. By directly studying protein dynamics, it delivers unparalleled insight into health and disease.

Sampling the Proteome — From Plasma to Cell Culture

Approximately two thirds of our body weight is made up of fluids and blood, though accounting for only about 8% of that total, is arguably the most informative. Composed of cellular components such as red blood cells, white blood cells, and platelets, as well as a liquid phase called plasma, blood is far more than a transport medium. Flowing through every organ and tissue, it captures real-time snapshots of the body’s physiological and pathological states, making it the most vital sample type in clinical diagnostics. It has already enabled the discovery of key biomarkers such as cardiac troponins, insulin, and C-reactive protein yet much of its proteomic landscape remains unexplored. Mass spectrometry is changing that, enabling the simultaneous detection of thousands of proteins with unmatched sensitivity and specificity.

Saliva

Saliva is a complex oral fluid produced by three pairs of major salivary glands, consisting of roughly 99% water alongside a rich mixture of proteins, enzymes, electrolytes, and antimicrobial compounds. Beyond its roles in digestion and oral health, saliva is increasingly recognized as a promising diagnostic biofluid, which offers a non-invasive and easily accessible window into systemic health. Its proteome reflects both local oral conditions and broader physiological states, with potential biomarkers identified for conditions ranging from oral cancer to cardiovascular disease and viral infections. While its protein concentrations are considerably lower than those found in blood, advances in mass spectrometry have made salivary proteomics increasingly feasible. Its ease of collection makes it particularly attractive for point-of-care diagnostics and large-scale screening applications.

Ocular Fluid

The eye contains two distinct fluid compartments: the aqueous humor, a clear fluid filling the anterior chamber, and the vitreous humor, a gel-like substance occupying the posterior segment. Both are in close proximity to ocular tissues and carry a unique proteome that reflects the local biochemical environment of the eye. Ocular fluids have gained significant interest in the study of conditions such as glaucoma, diabetic retinopathy, and age-related macular degeneration, where disease-specific protein changes can be detected before clinical symptoms arise. Due to the highly specialized nature of these fluids and the invasive nature of their collection, sample volumes are extremely limited placing high demands on analytical sensitivity. Mass spectrometry-based proteomics has proven essential in unlocking the diagnostic potential of this otherwise inaccessible compartment.

Cerebrospinal Fluid (CSF)

Cerebrospinal fluid is a clear, colorless liquid that surrounds and cushions the brain and spinal cord, acting as both a mechanical buffer and a biochemical communication channel between the central nervous system and the periphery. Produced primarily in the choroid plexus, there are roughly 500 ml generated daily but only about 150 ml circulate at any given time. Because CSF is in direct contact with brain tissue, its protein composition reflects neurological activity with remarkable fidelity, making it one of the most valuable biofluids for studying neurodegenerative diseases such as Alzheimer’s, Parkinson’s, and multiple sclerosis. Biomarkers like tau protein and amyloid-β have already transformed early diagnosis in this space. However, CSF collection requires lumbar puncture, limiting routine access and making every sample exceptionally valuable for proteomic analysis.

Urine

Urine is one of the most accessible and abundantly available biofluids, making it an attractive matrix for non-invasive proteomics. Produced by the kidneys as a filtrate of blood, urine carries a diverse array of proteins that reflect both renal function and systemic physiological states. Its proteome is particularly relevant for the diagnosis and monitoring of kidney diseases, urological cancers, and metabolic disorders. Biomarkers such as albumin and beta-2 microglobulin already in routine clinical use. However, urine presents analytical challenges: its protein concentration is low and highly variable, influenced by hydration status, diet, and circadian rhythms. Normalization strategies and enrichment steps are therefore critical to obtaining reliable and reproducible proteomic data.

Cell Culture

While not a bodily fluid, cell culture supernatant and lysate are among the most widely used sample types in proteomic research. By growing defined cell populations under controlled conditions, researchers can study protein expression, secretion, and modification in a highly reproducible and manipulable environment. The secretome, the set of proteins actively secreted by cells into the culture medium, offers particular insight into cell signaling, disease mechanisms, and potential therapeutic targets. Cell culture models are indispensable for validating biomarkers initially discovered in clinical biofluids, bridging the gap between basic research and diagnostic application. With the ability to introduce specific stimuli or genetic modifications, cell culture remains one of the most powerful platforms for dissecting the proteome at a mechanistic level.

Proteomics is undergoing a revolution

What once required years of work can now be done in hours: today’s advanced mass spectrometry technologies allow us to analyze thousands of proteins simultaneously with remarkable speed, precision, and from the smallest sample volumes. New approaches such as DIA (Data-Independent Acquisition) and single-cell proteomics make it possible to capture protein activity at an unprecedented level of detail. Powerful AI-driven analytics turn vast datasets into meaningful patterns helping distinguish health from disease and opening the door to earlier diagnoses and smarter therapies. Quantitative methods such as TMT, SILAC, and label-free quantification (LFQ) don’t just tell us which proteins are present, but also how much and under what conditions unlocking entirely new insights for personalized medicine.

Proteomics for Tomorrow's Medicine

Proteomics is at the beginning of a new era, with technologies that will fundamentally change our understanding of medicine. Single-cell & spatial proteomics visualize how proteins behave in their natural tissue environments. Multiomics integration links protein data with genomics, transcriptomics, and metabolomics for a comprehensive molecular picture. Automation & miniaturization increase the speed, efficiency, and scalability of analyses Clinical translation is becoming increasingly feasible through improved standardization and reproducibility, AI-based protein design opens new ways to predict, model, and engineer entirely new proteins, therefore, revolutionizing biotech and drug development. Beyond detection, targeted enrichment strategies are a key step in unlocking the deeper layers of complex proteomes. By selectively isolating specific protein groups such as low-abundance biomarkers, glycoproteins, or signaling molecules enrichment allows researchers to focus on the biologically and clinically relevant signals that would otherwise remain hidden. These techniques enhance the sensitivity and precision of mass spectrometry across a wide range of sample types, opening new possibilities in biomarker discovery, disease profiling, and personalized medicine.